[QSB-grads] Fwd: JGI Offering Integrative Genomics Resources for Your Complex Environmental Challenges

Fri Mar 8 06:14:05 PST 2019

---------- Forwarded message ---------
From: DOE Joint Genome Institute <degilbert at lbl.gov>
Date: Fri, Mar 8, 2019 at 6:04 AM
Subject: JGI Offering Integrative Genomics Resources for Your Complex
Environmental Challenges
To: <mbarlow at ucmerced.edu>

Spring has sprung in California. Will you join us April 2-5 at the JGI tech
super bloom in San Francisco?
View as Webpage
<http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqLYZwmFxtqbw-dFFjqedMZKAEZCZZE_agjsvJrTFmFzwCZjr65DWIlPqRQ6u8_6RdKdYieA7ZrIduRT8zHhBCkEmNPRYOiISIg==&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
<http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqPvdItnbkjejWLjnTTelwe1oASe5Pxrt_cUDwGpHcGkZVIS_XptMwlWZQfwSAmUWL5RhfGC5cWsR1-p0hWLICzI=&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
<http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqG63hRcmnzZ2oS83bjChmDlZSXUp8LbB2ltIfoZc5Zda6RsktE1IWWDBQjneJlsdP5wrBHjTXjJ9dllIy-DDzPO-WWON0HUicgLOg2ihrBxg&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
Only Hours Left to Register & Join Us in April!
The JGI's 14th Annual Genomics of Energy & Environment Meeting and New
Lineages of Life (NeLLi) Symposium registration deadline is rapidly
approaching. Don’t miss out, April 2-5 in San Francisco. There are still a
few slots for poster presentations. Go here
<http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqLYZwmFxtqbw4EtWUWkImmBSaFwA_MA_niWerWwUj3Cpa1zN5pm0LeWeZ17hAPP1lxSVARg68O0FwCHoDB-6bZs=&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
to register for either the Meeting and/or Symposium. Meeting Keynotes:

   - Mary Firestone
   <http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqPvdItnbkjej3tatjJlqD7Pk-R0WbDWCkOUPgY8OuqU4rQ4YQIoRD-bUTU8MZwEVjqrmPKqWEbrCLuZ40hfgG30kLDSLiwdVtARfK5Sq8SpN9PhXJ3k03sGt0YGvS10EXmDl8lpBuBn7&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
   , UC Berkeley: "Disentangling the Web of Interactions Shaping Microbial
   Communities in Soil”
   - Michael Purugganan
   <http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqDJUyNnLI0B7_0htJmw3YTYqiE2m1G7UbExtXCWm_zgBjg6Ge7gZeEEo7BcBoQ1NuAcq5Fs-NYmODRtLKODKeAgNF9YxLwrM1-gdW-nWYMDuQLxipSMh2eFw7QWE_2DD9axwa0-XNpzhD99UUUzuObhTnnK3uAmIWA==&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
   , NYU, “Selection for Gene Regulation in Rice”
   - Arturo Casadevall
   <http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqPvdItnbkjejbmP6zTmZQ9inALd6AUyhlHLKO-SqqMACB1w_u6Wer5neON1c4j95DxQp50kNeENEMn3zTEQBpSMYmwduGlGDr89O6J8RGzH5m7x2c8t8SMh2Vg9QehXwT_vVkM6bNptpu86xqXyQTmltMEmlm_dvpikCkdiqzXr3&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>,
   Johns Hopkins, “On the Origin of Virulence of Pathogenic Microbes”

Workshops
<http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqDxBqXd9mx3p0hLb5vNT_2zubDKqVAX0BpS3Pk5c7vCGhJdIkls5P73Y6KdfC2rBDPZKeKVl02kmo-rj2MrMFnU74V9n9pczFUW9Qtuzti-f13NpLL0Pe_o=&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>kick
off the Meeting, including isolate and microbiome analyses using the DOE
Systems Biology Knowledgebase
<http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqA5YAammPHaQyAWmTKtiFAdZCNmYzI3QEuf8-BVzLzhiRHAwad7Fqoat4zmkUu5U0cbRr0g19a8Y1L5joNrwaes=&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
(KBase),
and a “Mini Colloquium” covering JGI strategic technologies, e.g.,
sequence-to-function, single-cell omics, DNA synthesis, metabolomics, and in
vitro transcription/translation. The JGI Future Directions session will
help participants tailor proposals Community Science Program
<http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqLYZwmFxtqbwkqY9_9wCOjvt-BCl6I4O9FLiiRCj0RA1SP-yXlHdFbQuXl_tUrBezSaMYH-w3KsjnIcHoUVABOg=&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
 and the “Facilities Integrating Collaborations for User Science” (FICUS)
<http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqLYZwmFxtqbwwTcit7qPspUGvReZNxQb6qFW9K4argHYHOuE2ALr7LFQf3u0xD7l8UI_AnqFKRVtKnDplYGP21pwAWtPCjrOIA==&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
with the Environmental Molecular Science Laboratory
<http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqLYZwmFxtqbwx0HrclXizjPQn-nU7BY4Btg-1jpOutuuKyJcwdDHE1M9taqSU-4bDFnRBnDdQHiGLFj5231IooIUbktqKI23OBPj2C9dUCWL&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
(EMSL). Register here now
<http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqLYZwmFxtqbwLW25MHPwXUHKbcRWSD_ti8uZ7AOPIeh2PWljycTdhNmhezM0aS4KHaTooCVYaro42TPbY84H--z7bTMrorbZ2w==&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
for the 2019 JGI Meeting.

DEADLINE: Monday, March 11, 11:59pm PDT
<http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqDJUyNnLI0B7j08ynnm93wA-4HcMgPaP1ZBPVtP-tDWsszCNqonVQ48X8lnxwgwW_tN9jxW0-4JlLQR820Fga1I7lZRIynvR7sDk50wKzlsZdNHmOPO8GMM=&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
NeLLi 2019 Symposium:
>From New Lineages of Life to New Functions
The NeLLi 2019 International Symposium will inspire researchers to move
from identification of microbial novelty to assigning metabolic and
functional capabilities. NeLLi Symposium Keynotes:

   - Thijs Ettema,
   <http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqPvdItnbkjejiqfFN5qOt6t9I7T54BGHY8Xppmh2E3q_wUJYFoQSqv0e2Lyt7Ye9TMuoIbEp3-I9XrvokqXPKfnArrE8CtpXfo4n5tmVZF6HPkwnzRCFTZKt8XXs1FATtA==&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
   Uppsala University, “The Origin of Complex Cells”
   - Christa Schleper
   <http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqPvdItnbkjejNsR9tMMb3GG_GUA22Xi9uzoVp2k0QdzZOF14Ks1DJuh3M2Nkm-d_yNi2BfLPB76V-Ir-REM7ok6mDWTSbME1Z_IAtqy9moJeaNX0fi9h5-f0pQxBA4YWH2wHlap_tYi_ALx66G7Acfs=&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
   , University of Vienna, The Hot Origins and Mesophilic Adaptations of
   Ammonia-Oxidizing Thaumarchaea Deciphered by Ancestral Reconstructions”
   - John McCutcheon,
   <http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqPvdItnbkjej45kxfcAHGf0ulVs91GznN4nslobfQTMVWYqQtX8IPHeswP3JOa4b-qxAnXXi336HjigLSiG-9oZo6933i5CvTvqaXmhjEiWU&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
   University of Montana, “From Genomes to Function in an Insect-Bacterial
   Endosymbiosis”

Check out the line-up of speakers here
<http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqDJUyNnLI0B7j08ynnm93wA-4HcMgPaP1ZBPVtP-tDWsszCNqonVQ48X8lnxwgwW_tN9jxW0-4JlLQR820Fga1I7lZRIynvR7sDk50wKzlsZdNHmOPO8GMM=&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
.
<http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqDJUyNnLI0B7j08ynnm93wA-4HcMgPaP1ZBPVtP-tDWsszCNqonVQ48X8lnxwgwW_tN9jxW0-4JlLQR820Fga1I7lZRIynvR7sDk50wKzlsZdNHmOPO8GMM=&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
Register for NeLLi here
<http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqLYZwmFxtqbwPJQLRyWNptW_rCL1C58wWQAM-V4yW893FdnY33k8hwGaHj1aeXgBr8zsoXT7cYL3MLIIjoNy-YWM9XwAdCxKwQ==&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
.
<http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqLYZwmFxtqbwkqY9_9wCOjvt-BCl6I4O9FLiiRCj0RA1SP-yXlHdFbQuXl_tUrBezSaMYH-w3KsjnIcHoUVABOg=&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
CSP2020 Open Now
The 2020 Large-Scale Community Science Program (CSP)
<http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqLYZwmFxtqbwwTcit7qPspUGvReZNxQb6qFW9K4argHYHOuE2ALr7LFQf3u0xD7l8UI_AnqFKRVtKnDplYGP21pwAWtPCjrOIA==&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>call
is now open for letters of intent for peer-reviewed genomic science
projects entailing DNA/RNA sequencing, single-cell genomics, metabolomics,
and DNA analysis in support of the following targets:

   - Genes-to-function
   - Plant functional genomics and microbiomes
   - Inter-organismal interactions
   - Microbes and communities involved in elemental cycling in terrestrial
   and coastal environments
   - Algal genomics

Letters of Intent submission deadline: April 11, 2019. Submit one now
<http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqLYZwmFxtqbw5GqSkOctC64xvyT2H3rour9AkGtw_UNDhmfTPDe8yuFMohTHKSYzTH7mXyskunGQOOLSPdfUg7vpu_T4ViijCQ==&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
.
For scope or JGI capabilities questions, contact: JGI: Susannah Tringe
<SGTringe at lbl.gov>.
<http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqLYZwmFxtqbwwTcit7qPspUGvReZNxQb6qFW9K4argHYHOuE2ALr7LFQf3u0xD7l8UI_AnqFKRVtKnDplYGP21pwAWtPCjrOIA==&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
FICUS
<http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqLYZwmFxtqbwwTcit7qPspUGvReZNxQb6qFW9K4argHYHOuE2ALr7LFQf3u0xD7l8UI_AnqFKRVtKnDplYGP21pwAWtPCjrOIA==&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
combines JGI genomics and molecular characterization of the Environmental
Molecular Sciences Laboratory (EMSL) to accomplish one research project.
Focus areas include:

   - Biofuels and bioproducts
   - Biogeochemistry
   - Inter-organismal interactions
   - Novel applications of molecular techniques

Call for Letters of Intent submission deadline: March 20, 2019
For scope or EMSL capabilities questions, contact: Mary Lipton
<mary.lipton at pnnl.gov>
¡Get Hands-on with IGM/M this Summer in España!
Got data? Want to analyze data? The 9th FISABIO Summer School in Valencia,
Spain from July 8 to July 12 will provide the hands-on experience to
achieve proficiency in the computational resources residing in the Integrated
Microbial Genomes and Microbiomes (IMG/M)
<http://r20.rs6.net/tn.jsp?t=rl7xtp6ab.0.0.fr4447sab.0&id=preview&r=3&p=http%3A%2F%2Fbit.ly%2FJGI-IMG-M>
 for comparative analysis. For more information, check out the MGM site
<http://r20.rs6.net/tn.jsp?t=rl7xtp6ab.0.0.fr4447sab.0&id=preview&r=3&p=http%3A%2F%2Fbit.ly%2FJGI-MGM28>
.
<http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqG63hRcmnzZ2Wg2-ZBSNPJYrUwyXBq1W0B-fNk-XiGw2FQJur2vg39US2vCB59UzGVO5nt_H1CizvT5sqOTLPg-252QrL9QOjw==&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
<http://r20.rs6.net/tn.jsp?f=001HQLEaTeZMEVWQt8vDrNHXfLKPpw_f_IL4iGgZGvMpeA3mUjN_3FaqPvdItnbkjejWLjnTTelwe1oASe5Pxrt_cUDwGpHcGkZVIS_XptMwlWZQfwSAmUWL5RhfGC5cWsR1-p0hWLICzI=&c=iTeF0kEe3ClD6txxNDof40hlbPdNaD3zzh9wxIccpQOf4VkYiexQrQ==&ch=PnmY-v4nJm_A_fTJ-4wqD-1ze9r5lmOhssQAgUve26zmjGSGbX3zmg==>
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Facebook] ‌
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Miriam Barlow
Founding Faculty and Professor
Chair, Quantitative and Systems Biology
University of California, Merced

209.228.4174
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